Details

Study Basic Information

GWAS_Tomato_Solcap_m
Evaluation of the GWAS_Cherry Tomato panel_Solcap (Solanum pimpinellifolium) in Avignon (France) . Mean
Mean of metabolic, acids and sugars contents of GWAS_Cherry Tomato panel_Solcap core in Avignon (France) evaluated during summer 2007and 2008 to map loci controlling variation in fruit metabolites
01/01/2007
01/01/2008
Sauvage et al (2014) Genome-Wide Association in Tomato Reveals 44 Candidate Loci for Fruit Metabolic Traits
summer
Unité de Génétique et Amélioration des Fruits et Légumes, Plant Biology and Breeding, INRAe Avignon

Study Location Information

UR GAFL_Avignon
UR Génétique et Amélioration des Fruits et Légumes Avignon
FRA
greenhouse study
Plants were grown in a tunnel in Avignon, France, during the summers of 2007 and 2008 (growth conditions are also described in Xu et al., 2013)

Experimental Design Information

Plot design
Four replicates per accession were grown in a tunnel

Related GWAS Summary 1

GWAS Name ID Software GWAS Model
GWAS_Tomato_Solcap_Sauvage2014 R/MultLocMixMod Multilocus Mixed Model with Fixed Covariates (MLMM_COF)

Related Germplasms Summary 163

Germplasm ID INSTCODE Accession
CR001 INRAe-AVIGNON T103267
CR002 INRAe-AVIGNON T103392
CR003 INRAe-AVIGNON T103171
CR005 INRAe-AVIGNON T101372
CR006 INRAe-AVIGNON T103165
CR011 INRAe-AVIGNON T100198
CR017 INRAe-AVIGNON T100759
CR020 INRAe-AVIGNON T100944
CR021 INRAe-AVIGNON LA3343
CR022 INRAe-AVIGNON T100534
CR027 INRAe-AVIGNON T100794
CR030 INRAe-AVIGNON T100978
CR031 INRAe-AVIGNON T101609
CR049 INRAe-AVIGNON T100875
CR051 INRAe-AVIGNON T101142
CR052 INRAe-AVIGNON T101041
CR055 INRAe-AVIGNON LA2838A
CR056 INRAe-AVIGNON T300051
CR057 INRAe-AVIGNON L3708
CR058 INRAe-AVIGNON T300102
CR060 INRAe-AVIGNON LA0121
CR062 INRAe-AVIGNON LA1478
CR064 INRAe-AVIGNON T300094
CR065 INRAe-AVIGNON T300093
CR067 INRAe-AVIGNON VIR 1018
CR068 INRAe-AVIGNON VIR 108
CR069 INRAe-AVIGNON VIR 2863
CR070 INRAe-AVIGNON VIR 2909
CR071 INRAe-AVIGNON VIR 2920
CR072 INRAe-AVIGNON VIR 2921
CR073 INRAe-AVIGNON VIR 3101
CR074 INRAe-AVIGNON VIR 4053
CR075 INRAe-AVIGNON VIR 4156
CR076 INRAe-AVIGNON VIR 135
CR077 INRAe-AVIGNON VIR1565
CR078 INRAe-AVIGNON VIR 2759
CR079 INRAe-AVIGNON VIR 933
CR080 INRAe-AVIGNON VIR 914
CR081 INRAe-AVIGNON VIR 342
CR082 INRAe-AVIGNON VIR 362
CR083 INRAe-AVIGNON VIR 749
CR084 INRAe-AVIGNON VIR 939
CR085 INRAe-AVIGNON VIR 996
CR086 INRAe-AVIGNON VIR 364
CR087 INRAe-AVIGNON VIR 350
CR088 INRAe-AVIGNON VIR 697
CR089 INRAe-AVIGNON VIR 859
CR090 INRAe-AVIGNON VIR 2448
CR091 INRAe-AVIGNON VIR 416
CR092 INRAe-AVIGNON VIR 2277
CR094 INRAe-AVIGNON VIR 1011
CR095 INRAe-AVIGNON VIR 746
CR096 INRAe-AVIGNON VIR 797
CR097 INRAe-AVIGNON VIR 347
CR099 INRAe-AVIGNON VIR 744
CR100 INRAe-AVIGNON VIR 341
CR103 INRAe-AVIGNON LA0148
CR104 INRAe-AVIGNON LA0292
CR105 INRAe-AVIGNON LA1025
CR107 INRAe-AVIGNON LA1228
CR109 INRAe-AVIGNON LA1268
CR112 INRAe-AVIGNON LA1314
CR115 INRAe-AVIGNON LA1338
CR120 INRAe-AVIGNON LA1429
CR121 INRAe-AVIGNON LA1453
CR126 INRAe-AVIGNON LA0126
CR129 INRAe-AVIGNON LA0147
CR135 INRAe-AVIGNON LA0468
CR136 INRAe-AVIGNON LA0473
CR137 INRAe-AVIGNON LA0477
CR138 INRAe-AVIGNON LA1021
CR139 INRAe-AVIGNON LA1162
CR142 INRAe-AVIGNON LA1509
CR144 INRAe-AVIGNON LA1542
CR145 INRAe-AVIGNON LA1543
CR147 INRAe-AVIGNON LA1622
CR148 INRAe-AVIGNON LA2078
CR149 INRAe-AVIGNON LA2095
CR150 INRAe-AVIGNON LA2131
CR152 INRAe-AVIGNON LA2307
CR153 INRAe-AVIGNON LA2308
CR154 INRAe-AVIGNON LA2392
CR155 INRAe-AVIGNON LA2402
CR156 INRAe-AVIGNON LA2619
CR157 INRAe-AVIGNON LA2670
CR158 INRAe-AVIGNON LA2675
CR161 INRAe-AVIGNON LA2709
CR163 INRAe-AVIGNON LA0400
CR169 INRAe-AVIGNON LA1371
CR173 INRAe-AVIGNON LA1547
CR186 INRAe-AVIGNON LA1689
CR199 INRAe-AVIGNON T101800
CR202 INRAe-AVIGNON T300212
CR203 INRAe-AVIGNON LA1589
CR205 INRAe-AVIGNON T300045
CR234 INRAe-AVIGNON T100046
CR235 INRAe-AVIGNON T100071
CR236 INRAe-AVIGNON PI365923
CR237 INRAe-AVIGNON PI365925
CR239 INRAe-AVIGNON T101741
CR240 INRAe-AVIGNON T101743
CR241 INRAe-AVIGNON T101747
CR242 INRAe-AVIGNON T101752
CR243 INRAe-AVIGNON T101754
CR244 INRAe-AVIGNON T101755
CR246 INRAe-AVIGNON T101762
CR247 INRAe-AVIGNON F100160
CR248 INRAe-AVIGNON F100161
CR249 INRAe-AVIGNON T100167
CR250 INRAe-AVIGNON LA1221
CR252 INRAe-AVIGNON T100216
CR253 INRAe-AVIGNON T100258
CR254 INRAe-AVIGNON T100270
CR255 INRAe-AVIGNON T100293
CR256 INRAe-AVIGNON T100573
CR257 INRAe-AVIGNON T100575
CR258 INRAe-AVIGNON T100650
CR259 INRAe-AVIGNON T100695
CR260 INRAe-AVIGNON T100701
CR261 INRAe-AVIGNON T100716
CR262 INRAe-AVIGNON T100816
CR263 INRAe-AVIGNON T100868
CR264 INRAe-AVIGNON T100876
CR265 INRAe-AVIGNON T100878
CR266 INRAe-AVIGNON T101015
CR267 INRAe-AVIGNON T101062
CR268 INRAe-AVIGNON T101198
CR269 INRAe-AVIGNON T101211
CR270 INRAe-AVIGNON T101227
CR271 INRAe-AVIGNON T101234
CR272 INRAe-AVIGNON LA0292
CR273 INRAe-AVIGNON T101336
CR274 INRAe-AVIGNON T101496
CR275 INRAe-AVIGNON T101517
CR276 INRAe-AVIGNON T101518
CR277 INRAe-AVIGNON T101520
CR278 INRAe-AVIGNON T101528
CR279 INRAe-AVIGNON T101505
CR280 INRAe-AVIGNON T101504
CR281 INRAe-AVIGNON T101503
CR282 INRAe-AVIGNON T101502
CR283 INRAe-AVIGNON T101500
CR284 INRAe-AVIGNON T101499
CR285 INRAe-AVIGNON T101614
CR286 INRAe-AVIGNON T101619
CR287 INRAe-AVIGNON T101624
CR288 INRAe-AVIGNON T101625
CR289 INRAe-AVIGNON T101673
CR290 INRAe-AVIGNON T101679
CR291 INRAe-AVIGNON T101681
CR292 INRAe-AVIGNON T101684
CR293 INRAe-AVIGNON T101508
CR294 INRAe-AVIGNON T101514
CR295 INRAe-AVIGNON T101525
CR302 INRAe-AVIGNON T100967
CR308 INRAe-AVIGNON T100772
CR317 INRAe-AVIGNON LA4345
CR319 INRAe-AVIGNON T100932
CR324 INRAe-AVIGNON T100271
CR341 INRAe-AVIGNON T100194
CR351 INRAe-AVIGNON T100613
CR354 INRAe-AVIGNON T101013
CR360 INRAe-AVIGNON T101541